Papers

	Klein, A, Tourville, J. 2012.
	101 labeled brain images and a consistent human cortical labeling protocol.
	Frontiers in Brain Imaging Methods. 6:171. DOI: 10.3389/fnins.2012.00171
	Data and software (supplementary website)
	Avants, BB, Tustison, NJ, Song, G, Cook, PA, Klein, A, Gee, JC. 2011.
	A reproducible evaluation of ANTs similarity metric performance in brain image registration.
	NeuroImage. 54(3): 2033-2044. PMCID: PMC3065962.
	Klein, A, Ghosh, SS, Avants, B, Yeo, BTT, Fischl, B, Ardekani, B, Gee, JC, Mann, JJ, Parsey, RV. 2010.
	Evaluation of volume-based and surface-based brain image registration methods.
	NeuroImage. 51: 214-220. PMCID: PMC2862732.
	Supplementary website for PMC2862732
	Klein, A, Andersson, J, Ardekani, BA, Ashburner, J, Avants, B, Chiang, M-C, Christensen, GE, Collins, DL, Gee, J, Hellier, P, Song, JH, Jenkinson, M, Lepage, C, Rueckert, D, Thompson, P, Vercauteren, T, Woods, RP, Mann, JJ, Parsey, RV. 2009.
	Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration.
	NeuroImage. 46(3): 786-802. PMCID: PMC2747506
	Supplementary website for PMC2747506
	DeLorenzo, C, Klein, A, Mikhno, A, Gray, N, Zanderigo, F, Mann, JJ, Parsey, RV. 2009.
	A new method for assessing PET-MRI coregistration
	Proc. SPIE - Medical Imaging. 7259, 72592W.
	Klein, A, Mensh, B, Ghosh, S, Tourville, J, Hirsch, J. 2005.
	Mindboggle: Automated brain labeling with multiple atlases.
	BMC Medical Imaging. 5:7. PMCID: PMC1283974
	Klein, A, Hirsch, J. 2005.
	Mindboggle: A scatterbrained approach to automate brain labeling
	NeuroImage. 24(2): 261-280. PMID: 15627570

Conferences

	Klein, A, Bao, FS, Hame, Y, Stavsky, E, Giard, J, Haehn, D, Nichols, N, Ghosh, SS. 2012.
	Mindboggle: Automated human brain MRI feature extraction, labeling, morphometry, and online visualization.
	Neuroinformatics 2012 (Munich, Germany).
	Tourville, J, Klein, A. 2012.
	101 labeled brains and a new human cortical labeling protocol.
	Neuroinformatics 2012 (Munich, Germany).
	Bao, FS, Ghosh, SS, Giard, J, Parsey, RV, Klein, A. 2011.
	Brain shape analysis for predicting treatment remission in major depressive disorder.
	41st Annual Meeting for the Society for Neuroscience.
	Klein, A. 2011.
	Mindboggle: an informatics framework for open research in quantifying the shape of the human brain.
	BioImage Informatics II (talk at Janelia Farm).
	Lee, N and Klein, A. 2011.
	A graph-based database of hierarchical brain features.
	Frontiers in Neuroinformatics (Neuroinformatics 2011). doi:http://dx.doi.org/10.3389/conf.fninf.2011.08.00139
	Peruzzo, D, Bertoldo, A, Parsey, R, Klein, A. 2011.
	Automatic detection of corrupted volumes in DTI data.
	28th Annual Meeting for the European Society for Magnetic Resonance in Medicine and Biology.
	Bao, F, Lee, N, Hame, Y, Im, K, Riviere, D, Li, G, Klein, A. 2011.
	Automated extraction of nested sulcal features from human brain MRI data.
	17th Annual Meeting for the Organization of Human Brain Mapping.
	Klein, A, Worth, A, Tourville, J, Landman, B, Dal Canton, T, Ghosh, SS, Shattuck, D. 2010.
	An interactive tool for constructing optimal brain colormaps.
	40th Annual Meeting for the Society for Neuroscience.
	Website: http://www.braincolor.org/colors/
	Klein, A, Dal Canton, T, Ghosh, SS, Landman, B, Lee, J., Worth, A. 2010.
	Open labels: online feedback for a public resource of manually labeled brain images.
	16th Annual Meeting for the Organization of Human Brain Mapping.
	Website: http://www.braincolor.org/roygbiv/
	Avants, B, Klein, A, Tustison, N, Woo, J, Gee, JC. 2010.
	Evaluation of open-access, automated brain extraction methods on multi-site multi-disorder data.
	16th Annual Meeting for the Organization of Human Brain Mapping.
	Klein, A, Ghosh, SS, Avants, B, Fischl, B, Yeo, T, Mann, JJ, Parsey, RV. 2009.
	An evaluation of volume- and surface-based nonlinear registration of human brain MRI data.
	15th Annual Meeting for the Organization of Human Brain Mapping.*
	Klein, A. 2004.
	Activity patterns in the brain: breaking up the problem into pieces.
	International Conference on Complex Systems (ICCS2004 talk).
	Klein, A, Hirsch, J. 2003.
	Mindboggle: new developments in automated brain labeling.
	9th Annual Meeting for the Organization of Human Brain Mapping.
	Klein, A, Hirsch, J. 2002.
	Fully-automated nonlinear labeling of human brain activity.
	8th Annual Meeting for the Organization of Human Brain Mapping.
	Klein, A, Hirsch, J. 2001.
	Automatic labeling of brain anatomy and fMRI brain activity.
	7th Annual Meeting for the Organization of Human Brain Mapping.